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Sharine Wittkopp

Undergraduate
Bryn Mawr
Year of Entry into UCI MSTP
2007
Research Interests
biochemistry of immunology. mitochondrial proteins. preventive medicine. women's health.
Hobbies and Interests
dragon boat racing, yoga
Hometown
The Greater Philadelphia Area
Website

 

Lab Rotations Completed
Lab Advisor
Michael Selsted
Department
Pathology
Academic Quarter
Fall 2007
Project Topic
Isolation of Human Beta defensin-4
Project Abstract
Defensins have been identified as a class of antimicrobial peptides involved in innate immunity. Defensins have been investigated the in the context of multiple chronic disease states including chronic respiratory tract infections, cystic fibrosis, atopic dermatitis, and inflammatory bowel disorders. Beta-defensins possess a unique disulfide array that distinguishes them from alpha and theta-defensins. Of the ?-defensins, the gene for human ?-defensin-4 (hBD-4) has been identified through genomic database searching; however, the protein itself has not yet been isolated. Isolating hBD-4 protein from its natural source will allow for the determination of the sequence of the mature peptide as produced in human cells.

Lab Advisor
Vincent Procaccio
Department
Biological Chemistry
Academic Quarter
Winter 2008
Project Topic
Pathogenicity of a previously unreported mitochondrial DNA mutation
Project Abstract
Mitochondria are the principle site of oxidative energy metabolism in eukaryotic cells. Mitchondrial respiratory chain deficiencies in humans result in a wide range of clinical presentations. Mitochondrial diseases have been shown to result from mutations in mitochondrial genes located in either the nuclear DNA (nDNA) or mitochondrial DNA (mtDNA). However, mtDNA has been shown to accumulate 10 to 15 times more mutations compared to the nuclear genome. Since each cell contains hundreds of mitochondria and each mitochondrion may contain multiple copies of the genome, these mutations are frequently heteroplasmic with both mutated and normal mtDNA within the same cell. The heteroplasmy level, or percentage of mtDNA that is mutated, can differ between individuals as well as between tissues within an individual; and has been shown to correlate to the severity of symptoms. The Surveyor Nuclease has been used to identify mutations in the mitochondrial genome. The proband in our study, experienced a relatively mild progressive encephalopathy and was found to have a novel 15952C>T mutation in a highly conserved stem region of tRNAThr gene. Variable degrees of heteroplasmy were found in all patient tissues tested and a high percentage of mutant mtDNA was observed in muscle. Mutations found in the tRNA encoding regions of mtDNA have been linked to mitochondrial dysfunction, and bases in the stem regions of the tRNA molecules are more tightly constrained against substitutions. To determine if the proband 15952C>T mtDNA adversely affected mitochondrial enzyme activities, lymphoblastoid cells from the proband were chemically enucleated and fused to mtDNA-deficient 143B(TK-) ρo cells. Three independent patient transmitochondrial cybrids were generated with different mutant loads. These cells are currently being tested at the biochemical level to demonstrate a mitochondrial enzyme defect due to the mtDNA mutation using spectrophotometry and polarography. A correlation between the mutant load and severity of the biochemical defect will demonstrate the pathological nature of the novel mtDNA mutation.

 

 

PUBLICATIONS
Newman, A.H.; Robarge, M. J.; Howard, I. M.; Wittkopp, S. L; Kopajtic, T.; Izenwasser, S. J.; Katz, J. L. , Structure-Activity Relationships at the N-substituted-3a-[3’-Cl-, 4’-Cl- (4’, 4’’- diCl-substituted) diphenyl] methoxytropanes. . J. Med. Chem(2001), 44 (4): 633-640.

Suissa S, Wang Z, Poole J, Wittkopp S, Feder J, Shutt TE, Wallace DC, Shadel GS, Mishmar D. PLoS Genet. 2009 May;5(5), Ancient mtDNA genetic variants modulate mtDNA transcription and replication.. PLoS Genetics(2009), May; 5(5):e1000474.

 





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